About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1645878_1646471_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1645878 - 1646471
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
GTGTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
CCTCCCCCAATT
Flanking Amino Acid:
EGTDPQALPQESHSPTSDAL
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.2
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
72.3
0.5
1.1
65.2
45.5
Minor 5ss
28.6
-2.4
3
35.8
41
Minor BPS
48.3
-0
1.9
66.35
44.4

Associated Gene:

Gene:
SOX13
Ensembl Gene ID:
ENSAPLG00000016687
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038622
1645431 - 1652221
6791