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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1647772_1647882_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1647772 - 1647882
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGCG
5'SS Class:
major
3'SS Sequence:
CTCTTCCCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGGTCAC
U12 Branch Point Sequence:
CCCCTCTTCCCT
Flanking Amino Acid:
KINLLQQQIQQVNMPYVMIP
Intron Amino Acid Position:
295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
63.8
40.7
Major BPS
46.8
-0.2
1.4
48.8
46.3
Major PPT
82
0.72
0.7
73.4
31.6
Minor 5ss
28.9
-2.4
3.5
38.5
46.7
Minor BPS
36.1
-0.9
3.5
55.65
46.9

Associated Gene:

Gene:
SOX13
Ensembl Gene ID:
ENSAPLG00000016687
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038622
1645431 - 1652221
6791