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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1647998_1648079_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1647998 - 1648079
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCGAC
U12 Branch Point Sequence:
CGTCCCCCGACG
Flanking Amino Acid:
LPIQPIPCKPVDYPVQLLHS
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
43.6
-0.4
1.2
35.4
32.1
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
44.7
-0.5
2
50.47
43.2

Associated Gene:

Gene:
SOX13
Ensembl Gene ID:
ENSAPLG00000016687
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038622
1645431 - 1652221
6791