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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1648426_1648642_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1648426 - 1648642
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGGGTTCC
5'SS Class:
major
3'SS Sequence:
GCTTTGCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGATGCTGACGG
Flanking Amino Acid:
LQTSPSNLPLGFLGEGDAIT
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
62.8
38.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
67.8
0.4
1
59.4
41.8
Minor 5ss
34.2
-1.8
3
35.7
41.2
Minor BPS
39.9
-0.9
2.3
45.66
46.3

Associated Gene:

Gene:
SOX13
Ensembl Gene ID:
ENSAPLG00000016687
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038622
1645431 - 1652221
6791