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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1656369_1657386_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1656369 - 1657386
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
CCTTCCTGAGCC
Flanking Amino Acid:
LYVQVNKFSLASHFLWACWG
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
85.6
0.8
0.9
80.6
37
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
57.8
0.23
1.8
67.11
44.4

Associated Gene:

Gene:
ETNK2
Ensembl Gene ID:
ENSAPLG00000012663
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013177
1655222 - 1664437
9216