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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1668856_1669372_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1668856 - 1669372
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGACA
5'SS Class:
major
3'SS Sequence:
CCTCCTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
GGAGGCTCAGGG
Flanking Amino Acid:
KSGYWQISMKGVSVGAEVLF
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
68.4
38.2
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
74.9
0.56
0.9
68.5
31.8
Minor 5ss
26.7
-2.7
2.9
23.7
36.8
Minor BPS
32.8
-1.4
2.1
29.9
40.9

Associated Gene:

Gene:
REN
Ensembl Gene ID:
ENSAPLG00000012376
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012902
1667395 - 1674485
7091