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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1670724_1670868_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1670724 - 1670868
Intron Length:
145

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCCT
5'SS Class:
major
3'SS Sequence:
CGCCCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAAGAC
U12 Branch Point Sequence:
GCTCCCTGCAAA
Flanking Amino Acid:
KGFLSQDVVMVSDIPIIQVF
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
64.1
41.7
Major BPS
45
-0.3
1
36.4
29.3
Major PPT
69.6
0.44
0.8
60.6
35.2
Minor 5ss
35.2
-1.7
3.1
45.9
43.3
Minor BPS
45.4
-0.3
2
56.08
42.3

Associated Gene:

Gene:
REN
Ensembl Gene ID:
ENSAPLG00000012376
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012902
1667395 - 1674485
7091