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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1671675_1674322_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1671675 - 1674322
Intron Length:
2648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCAGA
5'SS Class:
major
3'SS Sequence:
CGTGTGCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
GTGCCCCCCACG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
66.8
40.3
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
66.6
0.37
0.9
61.9
39.9
Minor 5ss
33.4
-1.9
2.8
36.7
42.5
Minor BPS
40.8
-0.8
2.2
46.95
45.3

Associated Gene:

Gene:
REN
Ensembl Gene ID:
ENSAPLG00000012376
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012902
1667395 - 1674485
7091