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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1677474_1677558_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1677474 - 1677558
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTCCTCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAC
U12 Branch Point Sequence:
CTCATCTCACCC
Flanking Amino Acid:
FDSVLLAFGNILFLSGLVFI
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.7
33.9
Major BPS
76.2
0.65
0.9
77.4
26.5
Major PPT
80.6
0.69
0.7
72.9
31.9
Minor 5ss
32
-2.1
2.6
34
34
Minor BPS
46
-0.3
1.8
54.33
43.9

Associated Gene:

Gene:
GOLT1A
Ensembl Gene ID:
ENSAPLG00000027994
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036991
1677159 - 1678535
1377