Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1700167_1700262_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1700167 - 1700262

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TCCCCCTCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAG

U12 Branch Point Sequence:

AGGGCGCTGAGT

Flanking Amino Acid:

EVPPERPGGRASRPSRKGIA

Intron Amino Acid Position:

166

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

69.3

35.8

Major BPS

-0.2

1.6

40.4

42.3

Major PPT

78.6

0.64

0.7

72.5

25.6

Minor 5ss

28.1

-2.5

27.7

36.2

Minor BPS

36.6

-0.9

2.4

50.35

43.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030874

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018816

1697011 - 1722201

25191