About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1700597_1721905_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1700597 - 1721905
Intron Length:
21309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
GTGGCTCTAACC
Flanking Amino Acid:
PGASPRLLAASHNERRNTFL
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
76.5
0.6
0.9
69.4
36.8
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
52.7
0.06
1.8
63.47
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030874
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018816
1697011 - 1722201
25191