Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_173035_185773_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

173035 - 185773

Intron Length:

12739

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGCTG

5'SS Class:

strong_major

3'SS Sequence:

TCTTTAATTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

CTGTCTTTAATT

Flanking Amino Acid:

SCAADGGIQKDTCQDVLSSS

Intron Amino Acid Position:

680

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

66.1

45.1

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

83.9

0.76

0.8

78.3

33.7

Minor 5ss

40.5

-1.1

3.3

55.3

48.9

Minor BPS

76.9

0.92

1.2

83.09

39.1

Associated Gene:

Gene:

KCNC4

Ensembl Gene ID:

ENSAPLG00000015421

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019520

160976 - 186841

25866