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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1761045_1761351_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1761045 - 1761351
Intron Length:
307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
GCCTCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGTCAG
U12 Branch Point Sequence:
CCCGCGTCAGCC
Flanking Amino Acid:
PNVLAKRENRERIVESLTAA
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
42.3
-0.4
1.7
45
47.8
Major PPT
73
0.52
0.8
65.6
30.4
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
37.4
-0.9
2.3
41.44
45.4

Associated Gene:

Gene:
PIK3C2B
Ensembl Gene ID:
ENSAPLG00000023158
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031420
1759627 - 1767438
7812