Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1761386_1761664_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1761386 - 1761664

Intron Length:

279

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGGCA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTCAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCCT

U12 Branch Point Sequence:

TTTTCCTCAACA

Flanking Amino Acid:

PSRMQPKIQKDPNVLAKREN

Intron Amino Acid Position:

564

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

75.8

33.8

Major BPS

39.5

-0.6

4.3

85.7

34.9

Major PPT

81.8

0.71

0.8

78.1

29.3

Minor 5ss

29.5

-2.3

3.4

38.8

46.5

Minor BPS

83.9

1.06

1.3

92.11

Associated Gene:

Gene:

PIK3C2B

Ensembl Gene ID:

ENSAPLG00000023158

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031420

1759627 - 1767438

7812