Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1761812_1762423_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1761812 - 1762423

Intron Length:

612

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCCTT

5'SS Class:

strong_major

3'SS Sequence:

CCCCTGCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAG

U12 Branch Point Sequence:

CTCTGCTCAGCC

Flanking Amino Acid:

NEVDAFLAAEGDFPLKAERV

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

77.8

38.7

Major BPS

55.8

0.14

1.6

65.3

43.7

Major PPT

67.4

0.39

0.8

60.5

29.4

Minor 5ss

38.4

-1.3

3.3

55.8

48.4

Minor BPS

45.7

-0.3

2.2

58.11

46.7

Associated Gene:

Gene:

PIK3C2B

Ensembl Gene ID:

ENSAPLG00000023158

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031420

1759627 - 1767438

7812