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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1788046_1790576_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1788046 - 1790576
Intron Length:
2531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTCCTTCTAACA
Flanking Amino Acid:
CRITLGQANQVRPKLPLLKI
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
87.2
27.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81.7
0.71
0.8
80.5
31.5
Minor 5ss
40.4
-1.1
2.8
54.5
42.7
Minor BPS
49.7
-0
1.7
60.44
40

Associated Gene:

Gene:
MDM4
Ensembl Gene ID:
ENSAPLG00000012694
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013233
1787939 - 1801589
13651