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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1792290_1792677_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1792290 - 1792677
Intron Length:
388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TCTTTTTCAACA
Flanking Amino Acid:
GLESFSVKDPSPVYEMLKRN
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
83.9
0.76
0.8
81.1
29.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
66.6
0.52
1.5
74.67
37.4

Associated Gene:

Gene:
MDM4
Ensembl Gene ID:
ENSAPLG00000012694
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013233
1787939 - 1801589
13651