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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1795601_1796344_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1795601 - 1796344
Intron Length:
744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCCA
5'SS Class:
major
3'SS Sequence:
TTCCTTCACGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
CCTTCCTTCACG
Flanking Amino Acid:
VDKPSQDQLKFSPQEGSDTV
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
64.9
41.1
Major BPS
58.7
0.22
1.2
67
38
Major PPT
77
0.61
0.8
73.2
30.6
Minor 5ss
37.5
-1.4
3.1
48.7
47
Minor BPS
64.4
0.31
1.9
66.67
47.1

Associated Gene:

Gene:
MDM4
Ensembl Gene ID:
ENSAPLG00000012694
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013233
1787939 - 1801589
13651