About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1796442_1797817_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1796442 - 1797817
Intron Length:
1376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTAGAT
U12 Branch Point Sequence:
GTGACTTAGATT
Flanking Amino Acid:
TSEHKCENYGDKDLIENLSK
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
66.8
0.42
1.1
64.4
41.8
Major PPT
79.4
0.66
0.9
72.7
37.6
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
48.3
-0
1.7
63.69
41.4

Associated Gene:

Gene:
MDM4
Ensembl Gene ID:
ENSAPLG00000012694
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013233
1787939 - 1801589
13651