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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1797979_1798536_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1797979 - 1798536
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAG
U12 Branch Point Sequence:
TCTTCTCCAACA
Flanking Amino Acid:
NGSTDIQTNQDIDTAIVSDT
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
75.8
35.3
Major BPS
58.2
0.2
1.5
67.3
37.8
Major PPT
78.1
0.63
0.8
73.9
29.7
Minor 5ss
35.7
-1.6
2.6
42.3
44.5
Minor BPS
56.7
0.21
1.9
72.2
40

Associated Gene:

Gene:
MDM4
Ensembl Gene ID:
ENSAPLG00000012694
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013233
1787939 - 1801589
13651