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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_18168_24658_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18168 - 24658
Intron Length:
6491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGAGAC
5'SS Class:
major
3'SS Sequence:
TCTTCTGGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
CTCATCTTATGT
Flanking Amino Acid:
REYQLNDSASYYLNDLDRIS
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
65
33
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
73.8
0.54
0.9
73
37.3
Minor 5ss
32.6
-2
3.4
43.3
39.3
Minor BPS
47.5
-0.1
1.9
63.37
47.1

Associated Gene:

Gene:
GNAI3
Ensembl Gene ID:
ENSAPLG00000023137
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025578
1975 - 29054
27080