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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1851105_1851225_F

Intron Information:

Intron Rank:
146414
Intron Class:
major
Intron Phase:
Intron Coordinates:
1851105 - 1851225
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCTGTAAA
5'SS Class:
major
3'SS Sequence:
TTTGTCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTGAG
U12 Branch Point Sequence:
GTTTTGGTAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.3
75.9
35.2
Major BPS
48.7
-0
1.6
49.1
46.3
Major PPT
86.2
0.81
0.7
84.7
30.2
Minor 5ss
36.5
-1.5
2.5
42.3
44.5
Minor BPS
42.3
-0.5
2.6
67.64
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028886
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027049
1850947 - 1852035
1089