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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1922155_1924270_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1922155 - 1924270
Intron Length:
2116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTAC
5'SS Class:
major
3'SS Sequence:
TTGGAAATAACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTACGC
Flanking Amino Acid:
LVSAIEVPLDSNIQSELPQP
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
73.1
31.9
Major BPS
100
1.24
0.5
100
0
Major PPT
59.7
0.22
1.1
52.5
44.8
Minor 5ss
43.1
-0.8
2.8
58.5
40.5
Minor BPS
55.5
0.15
2.2
75.46
41.2

Associated Gene:

Gene:
NFASC
Ensembl Gene ID:
ENSAPLG00000006326
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039111
1921970 - 1959760
37791
ENSAPLT00000034519
1921970 - 1959760
37791
ENSAPLT00000018914
1921970 - 1959760
37791
ENSAPLT00000040390
1921970 - 1959760
37791