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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1924289_1924560_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1924289 - 1924560
Intron Length:
272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
CCCTCCTCACCG
Flanking Amino Acid:
VPLDSNIQSELPQPPTITKQ
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.9
31.3
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
83.8
0.76
0.8
77.6
36.1
Minor 5ss
37.8
-1.4
3.3
55.2
42.1
Minor BPS
47.8
-0.3
2
50.75
49.3

Associated Gene:

Gene:
NFASC
Ensembl Gene ID:
ENSAPLG00000006326
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039111
1921970 - 1959760
37791
ENSAPLT00000034519
1921970 - 1959760
37791
ENSAPLT00000018914
1921970 - 1959760
37791
ENSAPLT00000040390
1921970 - 1959760
37791