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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1925537_1925738_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1925537 - 1925738
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TTCCCCCGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CTTGTCCGAATT
Flanking Amino Acid:
PSPVIFWMSSSMEPIHQDKR
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.1
53
45.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
74.6
0.55
0.9
69.1
31.4
Minor 5ss
31.1
-2.2
2.9
42.2
44.3
Minor BPS
48
-0
1.9
68.67
42.7

Associated Gene:

Gene:
NFASC
Ensembl Gene ID:
ENSAPLG00000006326
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018914
1921970 - 1959760
37791
ENSAPLT00000006776
1921970 - 1959760
37791
ENSAPLT00000040390
1921970 - 1959760
37791
ENSAPLT00000039111
1921970 - 1959760
37791
ENSAPLT00000034519
1921970 - 1959760
37791