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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1928414_1932992_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1928414 - 1932992
Intron Length:
4579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTGATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TCCTGCTGATTT
Flanking Amino Acid:
SLRNHTDMYSARGVTETTPS
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
75.8
35.2
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
73.6
0.53
1
69.7
40.3
Minor 5ss
32.5
-2
3
38
41
Minor BPS
46.2
-0.2
2.1
63.99
46.8

Associated Gene:

Gene:
NFASC
Ensembl Gene ID:
ENSAPLG00000006326
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039111
1921970 - 1959760
37791
ENSAPLT00000034519
1921970 - 1959760
37791
ENSAPLT00000018914
1921970 - 1959760
37791
ENSAPLT00000006776
1921970 - 1959760
37791
ENSAPLT00000040390
1921970 - 1959760
37791