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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1936681_1937579_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1936681 - 1937579
Intron Length:
899

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAGCTG
5'SS Class:
major
3'SS Sequence:
TCTTACCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
AATGTCTTACCT
Flanking Amino Acid:
DSAKAYLTVLAVPANRLRDL
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
66.7
44.4
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
83.6
0.76
0.8
77.4
31
Minor 5ss
33.7
-1.9
3.5
46.7
48.6
Minor BPS
59.3
0.37
1.7
74.86
42

Associated Gene:

Gene:
NFASC
Ensembl Gene ID:
ENSAPLG00000006326
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040390
1921970 - 1959760
37791
ENSAPLT00000039111
1921970 - 1959760
37791
ENSAPLT00000018914
1921970 - 1959760
37791
ENSAPLT00000006776
1921970 - 1959760
37791