Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1938800_1939806_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1938800 - 1939806

Intron Length:

1007

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGC|GTGAGTACC

5'SS Class:

major

3'SS Sequence:

TTGCGAATATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCGAAT

U12 Branch Point Sequence:

TTCTCCCTATTG

Flanking Amino Acid:

PSERYQTNGARPEINPTGVQ

Intron Amino Acid Position:

738

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.9

0.38

1.3

65.8

40.2

Major BPS

54.4

0.11

1.5

63.6

42.5

Major PPT

63.6

0.31

1.1

60.6

43.8

Minor 5ss

32.5

-2

2.6

33.8

33.9

Minor BPS

52.1

-0

63.76

44.5

Associated Gene:

Gene:

NFASC

Ensembl Gene ID:

ENSAPLG00000006326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018914

1921970 - 1959760

37791

ENSAPLT00000006776

1921970 - 1959760

37791

ENSAPLT00000040390

1921970 - 1959760

37791

ENSAPLT00000039111

1921970 - 1959760

37791

ENSAPLT00000034519

1921970 - 1959760

37791