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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1988633_1992223_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1988633 - 1992223
Intron Length:
3591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CCCTCCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
TTTTGCTCAGCT
Flanking Amino Acid:
CTSLAVVTCVVWCQAQSSSR
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
81.4
0.71
0.7
75.6
26.4
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
56.7
0.29
2.2
84.42
42.2

Associated Gene:

Gene:
CNTN2
Ensembl Gene ID:
ENSAPLG00000005748
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006057
1988578 - 2004696
16119