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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1995088_1995736_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1995088 - 1995736
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
GGCTCTGCCACC
Flanking Amino Acid:
DTYQGRIIIQAQPEWLKVIT
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
82.4
0.73
0.8
76.5
32
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
38.9
-0.8
2.3
47.48
42.2

Associated Gene:

Gene:
CNTN2
Ensembl Gene ID:
ENSAPLG00000005748
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006057
1988578 - 2004696
16119