About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1995874_1996403_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1995874 - 1996403
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCAGCA
5'SS Class:
major
3'SS Sequence:
TTTGCCTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTGCCTGTACA
Flanking Amino Acid:
LRDGQPLTSQNRIEVSGGEL
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.2
59.8
39.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.2
0.63
0.9
72.5
37.7
Minor 5ss
35.2
-1.7
3.5
48.6
47
Minor BPS
59.7
0.3
1.9
76.33
40.5

Associated Gene:

Gene:
CNTN2
Ensembl Gene ID:
ENSAPLG00000005748
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006057
1988578 - 2004696
16119