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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1997549_1997821_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1997549 - 1997821
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCAGCA
5'SS Class:
major
3'SS Sequence:
TCTTCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCTTCTTCATT
Flanking Amino Acid:
KGTELLINSSRVTITADGTL
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
59.7
39.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
85.6
0.8
0.8
77.3
35.9
Minor 5ss
34.9
-1.7
3.6
48.1
47.6
Minor BPS
66.4
0.6
1.7
82.74
39.5

Associated Gene:

Gene:
CNTN2
Ensembl Gene ID:
ENSAPLG00000005748
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006057
1988578 - 2004696
16119