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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_1998778_1999054_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1998778 - 1999054
Intron Length:
277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
CCCACCATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
ATCTTAGTAACT
Flanking Amino Acid:
ASESATLTVRGPPGPPGGVV
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
64
0.32
0.9
53.7
35.1
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
49.9
0.07
2.2
74.82
42.1

Associated Gene:

Gene:
CNTN2
Ensembl Gene ID:
ENSAPLG00000005748
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006057
1988578 - 2004696
16119