About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2000764_2001158_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2000764 - 2001158
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
GAGGCTTTTATT
Flanking Amino Acid:
LTAVVYSAEEEPKVAPSRVT
Intron Amino Acid Position:
806

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
31.7
-2.1
3.1
39.7
45.9
Minor BPS
48.6
-0
1.7
61.03
43.5

Associated Gene:

Gene:
CNTN2
Ensembl Gene ID:
ENSAPLG00000005748
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006057
1988578 - 2004696
16119