Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2001782_2002228_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2001782 - 2002228

Intron Length:

447

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTGAGTGAG

5'SS Class:

major

3'SS Sequence:

TTGTGTCTCTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTGAA

U12 Branch Point Sequence:

CCTTGCTGAATC

Flanking Amino Acid:

PSTNVTTTKPPPRRPPGNIS

Intron Amino Acid Position:

907

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.7

0.56

1.3

68.4

38.7

Major BPS

0.42

1.1

57.3

41.7

Major PPT

75.3

0.57

0.9

73.8

36.9

Minor 5ss

-2.5

30.3

36.2

Minor BPS

51.9

0.04

1.9

62.53

43.6

Associated Gene:

Gene:

CNTN2

Ensembl Gene ID:

ENSAPLG00000005748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006057

1988578 - 2004696

16119