About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2018095_2021420_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2018095 - 2021420
Intron Length:
3326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTGATCTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTCACCT
Flanking Amino Acid:
VQAELGQPLTAGGAISELL*
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.6
0.6
0.8
74.5
36.3
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
56.2
0.27
1.8
77.81
39

Associated Gene:

Gene:
RBBP5
Ensembl Gene ID:
ENSAPLG00000005563
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005810
2016651 - 2028246
11596