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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2022128_2022790_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2022128 - 2022790
Intron Length:
663

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTCATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTTCATA
Flanking Amino Acid:
SVDPIAAFCSSDEELEDSKA
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87
0.83
0.6
84
24.2
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
71.1
0.66
1.7
82.68
32.7

Associated Gene:

Gene:
RBBP5
Ensembl Gene ID:
ENSAPLG00000005563
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005810
2016651 - 2028246
11596