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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2022861_2023457_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2022861 - 2023457
Intron Length:
597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
CCCTGATTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTGTCTTTAATT
Flanking Amino Acid:
DEDKSEPEQTGADAAEDEEV
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
67.8
0.4
0.8
65
35.3
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
83.9
1.14
1
91.43
32.3

Associated Gene:

Gene:
RBBP5
Ensembl Gene ID:
ENSAPLG00000005563
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005810
2016651 - 2028246
11596