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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2024198_2024307_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2024198 - 2024307
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGAACA
5'SS Class:
major
3'SS Sequence:
CACATCAACCTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TTCTCTTTCACA
Flanking Amino Acid:
TRGELLLDVAWHPVRPIIAS
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
68.4
36.4
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
53.3
0.08
0.9
44.2
36.1
Minor 5ss
36
-1.6
2.9
47.7
41.5
Minor BPS
68.9
0.59
1.7
78.6
38.6

Associated Gene:

Gene:
RBBP5
Ensembl Gene ID:
ENSAPLG00000005563
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005810
2016651 - 2028246
11596