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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2026936_2027026_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2026936 - 2027026
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCGCC
5'SS Class:
strong_major
3'SS Sequence:
CCGTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
CAGACCCTGACT
Flanking Amino Acid:
LESFGQNYPEEADGTLDCIS
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
74.6
37.4
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
71.6
0.49
0.8
65.4
30.4
Minor 5ss
37.6
-1.4
3.3
50.9
45.8
Minor BPS
50.5
0.1
1.8
65.71
44.6

Associated Gene:

Gene:
RBBP5
Ensembl Gene ID:
ENSAPLG00000005563
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005810
2016651 - 2028246
11596