Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2086658_2087491_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2086658 - 2087491

Intron Length:

834

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGTGGG

5'SS Class:

major

3'SS Sequence:

CCTTCCCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCCAAC

U12 Branch Point Sequence:

ACACCCTGAGCT

Flanking Amino Acid:

VVSAVYYCHKNGIVHRDLKL

Intron Amino Acid Position:

160

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

63.3

43.1

Major BPS

49.8

-0

1.2

34.3

Major PPT

82.9

0.74

0.7

76.7

25.3

Minor 5ss

25.6

-2.8

3.1

31.6

42.7

Minor BPS

50.1

0.08

1.7

66.26

43.6

Associated Gene:

Gene:

NUAK2

Ensembl Gene ID:

ENSAPLG00000020575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031064

2083276 - 2093492

10217