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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2123969_2124748_R

Intron Information:

Intron Rank:
29685
Intron Class:
major
Intron Phase:
Intron Coordinates:
2123969 - 2124748
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTATATAC
5'SS Class:
major
3'SS Sequence:
GTCTGTCTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
GTTACCTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
66.1
33.9
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
75.2
0.57
0.9
68.8
37.3
Minor 5ss
34.7
-1.7
2.9
42.6
44.3
Minor BPS
61
0.33
1.6
70.97
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005261
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005426
2123692 - 2129259
5568
ENSAPLT00000029276
2123692 - 2131947
8256
ENSAPLT00000025287
2123692 - 2132323
8632