Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2127910_2129828_R

Intron Information:

Intron Rank:

29690

Intron Class:

major

Intron Phase:

Intron Coordinates:

2127910 - 2129828

Intron Length:

1919

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTTGTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAA

U12 Branch Point Sequence:

CCCTCTTTATTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.3

0.74

0.9

74.7

28.6

Major BPS

78.5

0.71

0.9

69.7

37.1

Major PPT

81.2

0.7

0.9

31.9

Minor 5ss

29.2

-2.4

3.1

34.7

35.4

Minor BPS

56.2

0.27

1.6

66.47

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025287

2123692 - 2132323

8632

ENSAPLT00000029276

2123692 - 2131947

8256