Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2129931_2132185_R

Intron Information:

Intron Rank:

29691

Intron Class:

major

Intron Phase:

Intron Coordinates:

2129931 - 2132185

Intron Length:

2255

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGTGG

5'SS Class:

major

3'SS Sequence:

TTTTTTCCAAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTAAAT

U12 Branch Point Sequence:

TTTTTTCCAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.3

0.67

63.7

43.1

Major BPS

0.05

1.3

61.2

Major PPT

73.5

0.53

76.7

Minor 5ss

35.5

-1.6

3.3

46.8

48.5

Minor BPS

49.1

-0

1.9

69.25

36.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029603

2129829 - 2134140

4312

ENSAPLT00000025287

2123692 - 2132323

8632