Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2131623_2131730_R

Intron Information:

Intron Rank:

29696

Intron Class:

major

Intron Phase:

Intron Coordinates:

2131623 - 2131730

Intron Length:

108

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TTGTACTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAA

U12 Branch Point Sequence:

GTGGTTGTACTT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.7

0.96

0.8

78.3

32.5

Major BPS

73.1

0.58

79.6

29.1

Major PPT

82.2

0.73

0.9

73.6

41.5

Minor 5ss

35.1

-1.7

2.8

43.9

Minor BPS

40.5

-0.6

2.1

54.65

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005261

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029276

2123692 - 2131947

8256