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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2132324_2134055_R

Intron Information:

Intron Rank:
29698
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2132324 - 2134055
Intron Length:
1732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGCGCGT
5'SS Class:
weak_major
3'SS Sequence:
ATTTCTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCAATGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.5
0.13
1.3
46.5
48.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.5
0.78
0.8
77.2
36.4
Minor 5ss
37.1
-1.5
3.7
55.8
48.5
Minor BPS
48.3
-0
2
74.9
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005261
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029603
2129829 - 2134140
4312