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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_215014_216209_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
215014 - 216209
Intron Length:
1196

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAACCTGG
5'SS Class:
major
3'SS Sequence:
ACCTCCACCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCAAAC
U12 Branch Point Sequence:
CAAACCTCCACC
Flanking Amino Acid:
TREPTALCFWKQQQDGASQA
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.7
0.3
1.4
47.1
48.4
Major BPS
55
0.13
1
62.6
30.8
Major PPT
66.9
0.38
0.8
62.8
32.3
Minor 5ss
38
-1.4
4
46.8
48.5
Minor BPS
46
-0.3
2
53.71
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023711
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019379
214882 - 216776
1895