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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2187132_2193953_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2187132 - 2193953
Intron Length:
6822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCTGG
5'SS Class:
major
3'SS Sequence:
CCCTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCGCAA
U12 Branch Point Sequence:
CACCCCGCAACC
Flanking Amino Acid:
VQLPPAARSHRALPSLRARG
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
58.4
43.1
Major BPS
44.4
-0.3
1.3
48.9
36.6
Major PPT
74.5
0.55
0.7
68.7
25
Minor 5ss
43.9
-0.7
2.8
55.4
48.8
Minor BPS
44.6
-0.4
2.2
53.14
44.2

Associated Gene:

Gene:
CDK18
Ensembl Gene ID:
ENSAPLG00000004817
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034932
2186830 - 2203698
16869