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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2198965_2200159_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2198965 - 2200159
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
TTCTCACTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCTTTCTCACTT
Flanking Amino Acid:
LSRMSRRASLSDIGFGKLET
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
68.8
42.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.3
0.75
0.8
76.9
30.7
Minor 5ss
40.3
-1.1
3
54.3
37
Minor BPS
49.4
0.04
1.8
66.82
44.9

Associated Gene:

Gene:
CDK18
Ensembl Gene ID:
ENSAPLG00000004817
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034932
2186830 - 2203698
16869
ENSAPLT00000022395
2193826 - 2204876
11051
ENSAPLT00000005010
2181040 - 2203698
22659