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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_2198965_2200447_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2198965 - 2200447
Intron Length:
1483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTC|GTAAGTCTC
5'SS Class:
major
3'SS Sequence:
CCCTCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
GTGCCCTCCATT
Flanking Amino Acid:
LSRMSRRASLGTYATVFKGR
Intron Amino Acid Position:
186

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.3
68.8
42.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
73.3
0.52
0.8
64.7
30.8
Minor 5ss
40.3
-1.1
3
54.3
37
Minor BPS
48
-0
2
66.51
44.2

Associated Gene:

Gene:
CDK18
Ensembl Gene ID:
ENSAPLG00000004817
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017812
2193826 - 2203698
9873